Comprehensively Surveying Structure and Function of RING Domains from Drosophila melanogaster

Using a complete set of RING domains from Drosophila melanogaster, all the solved RING domains and cocrystal structures of RING-containing ubiquitin-ligases (RING-E3) and ubiquitin-conjugating enzyme (E2) pairs, we analyzed RING domains structures from their primary to quarternary structures. The results showed that: i) putative orthologs of RING domains between Drosophila melanogaster and the human largely occur (118/139, 84.9%); ii) of the 118 orthologous pairs from Drosophila melanogaster and the human, 117 pairs (117/118, 99.2%) were found to retain entirely uniform domain architectures, only Iap2/Diap2 experienced evolutionary expansion of domain architecture; iii) 4 evolutionary structurally conserved regions (SCRs) are responsible for homologous folding of RING domains at the superfamily level; iv) besides the conserved Cys/His chelating zinc ions, 6 equivalent residues (4 hydrophobic and 2 polar residues) in the SCRs possess good-consensus and conservation- these 4 SCRs function in the structural positioning of 6 equivalent residues as determinants for RING-E3 catalysis; v) members of these RING proteins located nucleus, multiple subcellular compartments, membrane protein and mitochondrion are respectively 42 (42/139, 30.2%), 71 (71/139, 51.1%), 22 (22/139, 15.8%) and 4 (4/139, 2.9%); vi) CG15104 (Topors) and CG1134 (Mul1) in C3HC4, and CG3929 (Deltex) in C3H2C3 seem to display broader E2s binding profiles than other RING-E3s; vii) analyzing intermolecular interfaces of E2/RING-E3 complexes indicate that residues directly interacting with E2s are all from the SCRs in RING domains. Of the 6 residues, 2 hydrophobic ones contribute to constructing the conserved hydrophobic core, while the 2 hydrophobic and 2 polar residues directly participate in E2/RING-E3 interactions. Based on sequence and structural data, SCRs, conserved equivalent residues and features of intermolecular interfaces were extracted, highlighting the presence of a nucleus for RING domain fold and formation of catalytic core in which related residues and regions exhibit preferential evolutionary conservation

Experimental Demonstration of Dark-State Metasurface Laser with Controllable Radiative Coupling

Lasing at the nanoscale using plasmonic nanoparticles offers the prospect of strong field concentration, hence strong light-matter interactions, low lasing thresholds, and ultrafast operation. However plasmonic nanoparticles suffer from high dissipative and radiative losses, the latter being rigidly tied to the shape of the nanoparticles and symmetry of their localized plasmon resonant modes. To overcome this limitation, recent theoretical work proposes using direct lasing into dark surface states to construct lasers that conceptually allow for independent implementation of the lasing state and its coherent radiation output. Here, lasing in dark resonant states of a metasurface laser and controllable coherent outcoupling of radiation with the aid of a tightly coupled, weakly radiative metasurface are demonstrated experimentally. The laser is implemented using a thin, low-loss dielectric film supporting surface mode-like dark dielectric bound states and the coupling metasurface is composed of small non-resonant scatterers that controllably but weakly perturb the dark mode and turn it partially bright. Distinct far-field signatures that can be observed experimentally for both dark and bright lasing are identified and demonstrated. The scalability of this design, here implemented for lasing in the near-infrared, enables large-aperture ultra-thin coherent light sources with controllable emission from the infrared to the visible.This article is published as Droulias, Sotiris, Sughra Mohamed, Heikki Rekola, Tommi K. Hakala, Costas M. Soukoulis, and Thomas Koschny. "Experimental Demonstration of Dark‐State Metasurface Laser with Controllable Radiative Coupling." Advanced Optical Materials 10, no. 12 (2022): 2102679. DOI: 10.1002/adom.202102679. Copyright 2022 The Authors. Attribution 4.0 International (CC BY 4.0). Posted with permission. DOE Contract Number(s): AC02‐07CH11358; AC02‐07CH11358

Polarization dependent beaming properties of a plasmonic lattice laser

Funding Information: The work was funded by the Academy of Finland (Projects 322002, 308393, 310511). The work is part of the Academy of Finland Flagship Programme, Photonics Research and Innovation (PREIN), decisions 320166 and 320165. Publisher Copyright: © 2021 The Author(s). Published by IOP Publishing Ltd on behalf of the Institute of Physics and Deutsche Physikalische Gesellschaft.We study beaming properties of laser light produced by a plasmonic lattice overlaid with organic fluorescent molecules. The crossover from spontaneous emission regime to stimulated emission regime is observed in response to increasing pump fluence. This transition is accompanied by a strong reduction of beam divergence and emission linewidth due to increased degree of spatial and temporal coherence, respectively. The feedback for the lasing signal is shown to be mainly one-dimensional due to the dipolar nature of the surface lattice resonance. Consequently, the beaming properties along x and y directions are drastically different. From the measurements, we obtain the M 2 value along both principal directions of the square lattice as a function of the pump fluence. Our work provides the first detailed analysis of the beam quality in plasmonic lattice lasers and reveals the underlying physical origin of the observed strong polarization dependent asymmetry of the lasing signal.Peer reviewe

Finite size mediated radiative coupling of lasing plasmonic bound state in continuum

Radiative properties of lasing plasmonic bound state in continuum are analyzed. The topological charge of the lasing signal is analyzed in the far field as well as in the source plane of the finite sized plasmonic lattice. The physical mechanism enabling the coupling of the BIC to radiation continuum is identified. We show that while the BICs have their origin in multipolar resonances, their far-field radiation properties are governed by the position dependent dipole moment distribution induced by the symmetry breaking in a finite plasmonic lattice. Remarkably, this dipole-moment enabled coupling to radiation continuum maintains the essential topological features of the infinite lattice BICs

Interaction of the TNFR-Receptor Associated Factor TRAF1 with I-kappa B Kinase-2 and TRAF2 Indicates a Regulatory Function for NF-kappa B Signaling

*Background*
I-kappa B kinase 2 (IKK2 or IKK-beta) is one of the most crucial signaling kinases for activation of NF-kappa B, a transcription factor that is important for inflammation, cell survival and differentiation. Since many NF-kappa B activating pathways converge at the level of IKK2, molecular interactions of this kinase are pivotal for regulation of NF-kappa B signaling.

*Methodology/Principal Findings*
We searched for proteins interacting with IKK2 using the C-terminal part (amino acids 466-756) as bait in a yeast two-hybrid system and identified the N-terminal part (amino acids 1-228) of the TNF-receptor associated factor TRAF1 as putative interaction partner. The interaction was confirmed in human cells by mammalian two-hybrid and coimmunoprecipitation experiments. The IKK2/TRAF1 interaction seemed weaker than the interaction between TRAF1 and TRAF2, an important activating adapter molecule of NF-kappa B signaling. Reporter gene and kinase assays using ectopic expression of TRAF1 indicated that it can both activate and inhibit IKK2 and NF-kappa B. Co-expression of fluorescently tagged TRAF1 and TRAF2 at different ratios implied that TRAF1 can affect clustering and presumably the activating function of TRAF2 in a dose dependent manner.

*Conclusions/Significance*
The observation that TRAF1 can either activate or inhibit the NF-kappa B pathway and the fact that it influences the oligomerization of TRAF2 indicates that relative levels of IKK2, TRAF1 and TRAF2 may be important for regulation of NF-kappa B activity. Since TRAF1 is an NF-kappa B induced gene, it might act as a feedback effector molecule